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arXiv:2308.06578q-bio.NC

The time is ripe to reverse engineer an entire nervous system: simulating behavior from neural interactions

Gal Haspel, Ben Baker, Isabel Beets, Edward S Boyden, Jeffrey Brown, George Church, Netta Cohen, Daniel Colon-Ramos, Eva Dyer, Christopher Fang-Yen, Steven Flavell, Miriam B Goodman, Anne C Hart, Eduardo J Izquierdo, Konstantinos Kagias, Shawn Lockery, Yangning Lu, Adam Marblestone, Jordan Matelsky, Brett Mensh, Talmo D Pereira, Hanspeter Pfister, Kanaka Rajan, Horacio G Rotstein, Monika Scholz, Joshua W. Shaevitz, Eli Shlizerman, Quilee Simeon, Michael A Skuhersky, Vineet Tiruvadi, Vivek Venkatachalam, Donglai Wei, Brock Wester, Guangyu Robert Yang, Eviatar Yemini, Manuel Zimmer, Konrad P Kording

Early discovery. Linked by one identifiable commenter. This paper is outside the main ranking; a mention is not an endorsement.

Abstract

Just like electrical engineers understand how microprocessors execute programs in terms of how transistor currents are affected by their inputs, neuroscientists want to understand behavior production in terms of how neuronal outputs are affected by their inputs and internal states. This dependency of neuronal outputs on inputs can be described by a state-dependent input-output (IO)-function. However, to reliably identify these IO-functions, we need to perturb each input and combinations of inputs while observing all the outputs. Here, we argue that such completeness is possible in C. elegans; a complete description that goes all the way from the activity of every neuron to predict behavior. The established and growing toolkit of optophysiology can non-invasively capture and control every neuron's activity and scale to countless experiments. The information from many such experiments can be pooled while capturing the inter-individual variability because neuronal identity and function are largely conserved across individuals. Just like electrical engineers use transistor IO-functions to simulate program execution, we argue that neuronal IO-functions could be used to simulate the impressive breadth of brain states and behaviors of C. elegans.

arXiv comments
28 pages, 2 figures, opinion paper
Journal reference
DOI
Subjects
q-bio.NCNeurons and Cognition

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    • Maybe the longer writeup we put out with Michael as co-author helps add some useful extra details: https://arxiv.org/abs/2308.06578

      koerding2View on HNParent context

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