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arXiv:2004.01105q-bio.PE

Inferring change points in the COVID-19 spreading reveals the effectiveness of interventions

Jonas Dehning, Johannes Zierenberg, F. Paul Spitzner, Michael Wibral, Joao Pinheiro Neto, Michael Wilczek, Viola Priesemann

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Abstract

As COVID-19 is rapidly spreading across the globe, short-term modeling forecasts provide time-critical information for decisions on containment and mitigation strategies. A main challenge for short-term forecasts is the assessment of key epidemiological parameters and how they change when first interventions show an effect. By combining an established epidemiological model with Bayesian inference, we analyze the time dependence of the effective growth rate of new infections. Focusing on the COVID-19 spread in Germany, we detect change points in the effective growth rate that correlate well with the times of publicly announced interventions. Thereby, we can quantify the effect of interventions, and we can incorporate the corresponding change points into forecasts of future scenarios and case numbers. Our code is freely available and can be readily adapted to any country or region.

arXiv comments
23 pages, 11 figures. Our code is freely available and can be readily adapted to any country or region ( https://github.com/Priesemann-Group/covid19_inference_forecast/ )
Journal reference
Science 369, 160 (2020)
DOI
doi:10.1126/science.abb9789
Subjects
q-bio.PEPopulations and Evolution

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    • This repo is maintained the Max-Planck-Institut für Dynamik und Selbstorganisation (dynamics and self-organization). The preprint is available here: https://arxiv.org/abs/2004.01105

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