arXiv:1811.02834stat.ML
Fused Gromov-Wasserstein distance for structured objects: theoretical foundations and mathematical properties
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Abstract
Optimal transport theory has recently found many applications in machine learning thanks to its capacity for comparing various machine learning objects considered as distributions. The Kantorovitch formulation, leading to the Wasserstein distance, focuses on the features of the elements of the objects but treat them independently, whereas the Gromov-Wasserstein distance focuses only on the relations between the elements, depicting the structure of the object, yet discarding its features. In this paper we propose to extend these distances in order to encode simultaneously both the feature and structure informations, resulting in the Fused Gromov-Wasserstein distance. We develop the mathematical framework for this novel distance, prove its metric and interpolation properties and provide a concentration result for the convergence of finite samples. We also illustrate and interpret its use in various contexts where structured objects are involved.
is the loss you're talking about like fused gromov-wasserstein distance? we hit permutation invariance issues like what you're talking about in some atomistic simulations because the atoms need to be permutable if you want to use the same model for chemistry as protein…
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