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arXiv:1403.2658q-bio.OT

Pairwise alignment of the DNA sequence using hypercomplex number representation

Jian-Jun Shu, Li Shan Ouw

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Abstract

A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex number representation of the DNA base-nucleic acid codes and incorporated with the method of dot matrix analysis and various algorithms of sequence alignment. The problem of DNA sequence alignment can be processed in a rather similar way as pairwise alignment of protein sequence.

arXiv comments
Journal reference
Bulletin of Mathematical Biology, Vol. 66, No. 5, pp. 1423-1438, 2004
DOI
doi:10.1016/j.bulm.2004.01.005
Subjects
q-bio.OTOther Quantitative Biology

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